| figures/ | directory with graphs and figures | ||||
| bin/ | directory with programs | ||||
| [data_*] | |||||
| aba tools | I/O scripts | ||||
| paints/ | directory with region boundaries | ||||
| reference atlas/ | directory with ABA reference atlas | ||||
| follow the lines/ | directory with region boundaries which more strictly follow the coordinates derived from the ABA reference atlas, without so many of my subjective corrections | ||||
| follow the lines plus obvious corrections/ | follow the lines plus only the most obvious corrections | ||||
| Mouse.aba.R.coordinate file 369.2007-08-28.23460.coord | try8 caret fiducial coordinate file | ||||
| Mouse.aba.R.spec | caret spec file | ||||
| Mouse.aba.R.coordinate file 368.2007-08-28.23460.coord | try8 caret raw coord file | ||||
| Mouse.aba.R.CerebralHull.2007-08-28.BRIK | try8 caret cerebral hill brik file | ||||
| Mouse.aba.R.CerebralHull.2007-08-28.HEAD | try8 caret cerebral hill head file | ||||
| Mouse.aba.R.CerebralHull.vtk | caret cerebral hull vtk file | ||||
| Mouse.aba.R.border color file 4.2007-08-27.bordercolor | try 8 caret border color file | ||||
| Mouse.aba.R.border projection file 93.2007-08-28.borderproj | try 8 caret border projection file | ||||
| Mouse.aba.R.topology file 367.2007-08-28.23460.topo | try8 caret closed topology file | ||||
| [[aba_annotation_ourctx.nii?]] | NIFTI ABA cortical annotation volume | ||||
| Mouse.aba.R.Ellipsoidal.2007-08-28.23460.coord | try8 caret ellipsoidal coord file | ||||
| Mouse.aba.R.Inflated.2007-08-28.23460.coord | try8 caret Inflated coord file | ||||
| Mouse.aba.R.VeryInflated.2007-08-28.23460.coord | try8 caret VeryInflated? coord file | ||||
| Mouse.aba.R.Spherical.2007-08-28.23460.coord | try8 caret Spherical coord file | ||||
| Mouse.aba.R.border file 96.2007-08-28.border | try8 caret Inflated border file | ||||
| Mouse.aba.R.border file 97.2007-08-28.border | try8 caret VeryInflated? border file | ||||
| Mouse.aba.R.border file 98.2007-08-28.border | try8 caret Spherical border file | ||||
| Mouse.aba.R.border file 99.2007-08-28.border | try8 caret ellipsoidal border file | ||||
| Mouse.aba.R.metricfile 119.2007-08-28.23460.metric | try8 caret metric file | ||||
| composite try8 gs 2200 10000 100 1100 500 500.metric | surface-mapped gene expression data file | ||||
| Mouse.aba.R.paint file 20.2007-08-28.23460.paint | try8 paint file | ||||
| paint.txt | paint file (hand-edited so that it can be read into matlab) | ||||
| paint names.txt | names corresponding to numbered areas in paint.txt | ||||
| [[my_griddata.m?]] | custom version of Octave's "griddata" command which replaces the call to "dsearch" with a call to "my_dsearch" | ||||
| [[my_dsearch.m?]] | Octave doesn't provide dsearch, so here's a simple version of it |
| [[]] |