| remove_linear_dependencies | | |
| make_3_discretization | | |
| make_c4.5_dataset| | | |
| overlay_red_onto_grayscale | takes two images, a grayscale and a binary, and overlays the binary one as red | |
| overlay_red_border_onto_grayscale | takes two images, a grayscale and a region, and overlays the border of the region as red | |
| write_nifti_file | given a header struct and a data matrix, writes a NIFTI file to disk | |
| aba_raster_to_nifti_file | takes a raster (in ABA coordinates) and writes it as a NIFTI file (in LPI orientation) | |
| sva_to_masked_nifti_volume | takes the path to an ABA .sva file, and a mask, and creates a NIFTI file for each hemisphere (left hemisphere commented out) (in progress) | |
| aba_sva_directory_to_masked_nifti_volumes | takes the path to a directory full of .svas, and a right hemisphere mask, and (1) creates a full brain mask by mirroring the right hemisphere mask, (2) iterates through ABA .sva files in the given directory, running sva_to_masked_nifti_volume on them (in progress) | |
| createOurAbaCorticalMask | creates a custom, contiguous mask of those ABA voxels coming from those brain areas that we are interested in (i.e. what we deem "cortex") (in progress) | |
| removeVoxelsWithFewNeighbors | | |
| load_sva | loads an ABA .sva file | |
| load_sva_as_raster | loads an ABA .sva file as a raster (i.e. the full space is a matrix, rather than a sparse list of occupied voxels) | |
| blank_nifti_header | | |