| [[abaVoxelCoordinatesToNiftiCoordinates.m?]] | | |
| area codes.txt | | |
| coronal/ | directory with coronal ABA reference atlas jpgs. The jpgs are named for their "depth" in the ABA. The file depths.txt converts "depths" to mm. Also, for each section X.jpg, a file X.txt which contains the results of using ImageJ to record the coordinates of the boundaries between cortical regions. Other coordinates are also in those files when the a region boundary was sufficiently curved (i.e. so by drawing lines between the coordinates in those files, you should get a good approximation of the region boundaries). The file labels.txt labels each of these line segments according to the area to which it belongs. | |
| sagittal/ | directory; like "coronal/", above, but sagittal. | |
| [[createLineSegmentsFromImageJMeasurements.m?]] | | |
| [[loadPtsFromSavedImageJMeasurements.m?]] | | |
| [[mmAtlasCoordinatesToAbaVoxelCoordinates.m?]] | | |
| ptsFromAtlas.border | | |
| [[savedImageJMeasurementsToBorderFile.m?]] | the main program to convert the saved ImageJ measurements into a Caret5 border file | |