bin

< Directory with programs
< || [[Self:remove_linear_dependencies|remove_linear_dependencies]] || ||
< || [[Self:make_3_discretization|make_3_discretization]] || ||
< || [[Self:make_c45_dataset|make_c4.5_dataset|]] || ||
< || overlay_red_onto_grayscale || takes two images, a grayscale and a binary, and overlays the binary one as red ||
< || overlay_red_border_onto_grayscale || takes two images, a grayscale and a region, and overlays the border of the region as red ||
< || write_nifti_file || given a header struct and a data matrix, writes a NIFTI file to disk ||
< || aba_raster_to_nifti_file || takes a raster (in ABA coordinates) and writes it as a NIFTI file (in LPI orientation) ||
< || sva_to_masked_nifti_volume || takes the path to an ABA .sva file, and a mask, and creates a NIFTI file for each hemisphere (left hemisphere commented out) (in progress) ||
< || aba_sva_directory_to_masked_nifti_volumes || takes the path to a directory full of .svas, and a right hemisphere mask, and (1) creates a full brain mask by mirroring the right hemisphere mask, (2) iterates through ABA .sva files in the given directory, running sva_to_masked_nifti_volume on them (in progress) ||
< || createOurAbaCorticalMask || creates a custom, contiguous mask of those ABA voxels coming from those brain areas that we are interested in (i.e. what we deem "cortex") (in progress) ||
< || removeVoxelsWithFewNeighbors || ||
< || load_sva || loads an ABA .sva file ||
< || load_sva_as_raster || loads an ABA .sva file as a raster (i.e. the full space is a matrix, rather than a sparse list of occupied voxels) ||
< || blank_nifti_header || ||
< * [[Self:|]]