cg

view bib.bib @ 66:f14c34563ff8

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author bshanks@bshanks.dyndns.org
date Mon Apr 20 13:08:18 2009 -0700 (16 years ago)
parents
children
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1 
2 @misc{_zotero_????,
3 title = {Zotero - Quick Start Guide},
4 url = {http://www.zotero.org/documentation/quick_start_guide}
5 },
7 @article{__????
8 },
10 @misc{_genome-wide_????,
11 title = {Genome-wide atlas of gene expression in the adult mouse brain : Abstract : Nature},
12 url = {http://www.nature.com/nature/journal/v445/n7124/abs/nature05453.html}
13 },
15 @article{lein_genome-wide_2007,
16 title = {Genome-wide atlas of gene expression in the adult mouse brain},
17 volume = {445},
18 issn = {0028-0836},
19 url = {http://dx.doi.org/10.1038/nature05453},
20 doi = {10.1038/nature05453},
21 number = {7124},
22 journal = {Nature},
23 author = {Ed S. Lein and Michael J. Hawrylycz and Nancy Ao and Mikael Ayres and Amy Bensinger and Amy Bernard and Andrew F. Boe and Mark S. Boguski and Kevin S. Brockway and Emi J. Byrnes and Lin Chen and Li Chen and {Tsuey-Ming} Chen and Mei Chi Chin and Jimmy Chong and Brian E. Crook and Aneta Czaplinska and Chinh N. Dang and Suvro Datta and Nick R. Dee and Aimee L. Desaki and Tsega Desta and Ellen Diep and Tim A. Dolbeare and Matthew J. Donelan and {Hong-Wei} Dong and Jennifer G. Dougherty and Ben J. Duncan and Amanda J. Ebbert and Gregor Eichele and Lili K. Estin and Casey Faber and Benjamin A. Facer and Rick Fields and Shanna R. Fischer and Tim P. Fliss and Cliff Frensley and Sabrina N. Gates and Katie J. Glattfelder and Kevin R. Halverson and Matthew R. Hart and John G. Hohmann and Maureen P. Howell and Darren P. Jeung and Rebecca A. Johnson and Patrick T. Karr and Reena Kawal and Jolene M. Kidney and Rachel H. Knapik and Chihchau L. Kuan and James H. Lake and Annabel R. Laramee and Kirk D. Larsen and Christopher Lau and Tracy A. Lemon and Agnes J. Liang and Ying Liu and Lon T. Luong and Jesse Michaels and Judith J. Morgan and Rebecca J. Morgan and Marty T. Mortrud and Nerick F. Mosqueda and Lydia L. Ng and Randy Ng and Geralyn J. Orta and Caroline C. Overly and Tu H. Pak and Sheana E. Parry and Sayan D. Pathak and Owen C. Pearson and Ralph B. Puchalski and Zackery L. Riley and Hannah R. Rockett and Stephen A. Rowland and Joshua J. Royall and Marcos J. Ruiz and Nadia R. Sarno and Katherine Schaffnit and Nadiya V. Shapovalova and Taz Sivisay and Clifford R. Slaughterbeck and Simon C. Smith and Kimberly A. Smith and Bryan I. Smith and Andy J. Sodt and Nick N. Stewart and {Kenda-Ruth} Stumpf and Susan M. Sunkin and Madhavi Sutram and Angelene Tam and Carey D. Teemer and Christina Thaller and Carol L. Thompson and Lee R. Varnam and Axel Visel and Ray M. Whitlock and Paul E. Wohnoutka and Crissa K. Wolkey and Victoria Y. Wong and Matthew Wood and Murat B. Yaylaoglu and Rob C. Young and Brian L. Youngstrom and Xu Feng Yuan and Bin Zhang and Theresa A. Zwingman and Allan R. Jones},
24 year = {2007},
25 pages = {168--176}
26 },
28 @article{ng_anatomic_2009,
29 title = {An anatomic gene expression atlas of the adult mouse brain},
30 volume = {12},
31 issn = {1097-6256},
32 url = {http://dx.doi.org/10.1038/nn.2281},
33 doi = {10.1038/nn.2281},
34 number = {3},
35 journal = {Nat Neurosci},
36 author = {Lydia Ng and Amy Bernard and Chris Lau and Caroline C Overly and {Hong-Wei} Dong and Chihchau Kuan and Sayan Pathak and Susan M Sunkin and Chinh Dang and Jason W Bohland and Hemant Bokil and Partha P Mitra and Luis Puelles and John Hohmann and David J Anderson and Ed S Lein and Allan R Jones and Michael Hawrylycz},
37 month = mar,
38 year = {2009},
39 pages = {356--362}
40 },
42 @article{thompson_genomic_2008,
43 title = {Genomic Anatomy of the Hippocampus},
44 volume = {60},
45 issn = {0896-6273},
46 url = {http://www.sciencedirect.com/science/article/B6WSS-4V70FHY-9/2/a4de532b1bf60f0d033eacad345b935e},
47 doi = {10.1016/j.neuron.2008.12.008},
48 abstract = {Summary
49 Availability of genome-scale in situ hybridization data allows systematic analysis of genetic neuroanatomical architecture. Within the hippocampus, electrophysiology and lesion and imaging studies demonstrate functional heterogeneity along the septotemporal axis, although precise underlying circuitry and molecular substrates remain uncharacterized. Application of unbiased statistical component analyses to genome-scale hippocampal gene expression data revealed robust septotemporal molecular heterogeneity, leading to the identification of a large cohort of genes with robust regionalized hippocampal expression. Manual mapping of heterogeneous {CA3} pyramidal neuron expression patterns demonstrates an unexpectedly complex molecular parcellation into a relatively coherent set of nine expression domains in the septal/temporal and proximal/distal axes with reciprocal, nonoverlapping boundaries. Unique combinatorial profiles of adhesion molecules within these domains suggest corresponding differential connectivity, which is demonstrated for {CA3} projections to the lateral septum using retrograde labeling. This complex, discrete molecular architecture provides a novel paradigm for predicting functional differentiation across the full septotemporal extent of the hippocampus.},
50 number = {6},
51 journal = {Neuron},
52 author = {Carol L. Thompson and Sayan D. Pathak and Andreas Jeromin and Lydia L. Ng and Cameron R. {MacPherson} and Marty T. Mortrud and Allison Cusick and Zackery L. Riley and Susan M. Sunkin and Amy Bernard and Ralph B. Puchalski and Fred H. Gage and Allan R. Jones and Vladimir B. Bajic and Michael J. Hawrylycz and Ed S. Lein},
53 month = dec,
54 year = {2008},
55 keywords = {{MOLNEURO,SYSBIO,SYSNEURO}},
56 pages = {1010--1021}
57 },
59 @inproceedings{shanks_wikigateway:library_2005,
60 address = {San Diego, California},
61 title = {{WikiGateway:} a library for interoperability and accelerated wiki development},
62 isbn = {1-59593-111-2},
63 url = {http://portal.acm.org/citation.cfm?id=1104973.1104979},
64 doi = {10.1145/1104973.1104979},
65 abstract = {{WikiGateway} is an open-source suite of tools for automated interaction with wikis:• Python and Perl modules with functions like {getPage,} {putPage,} {getRecentChanges,} and more.• A mechanism to add {DAV,} Atom, or {XMLRPC} capabilities to any supported wiki server.• A command-line tool with functionality similar to the Perl and Python modules.• Demo applications built on top of these tools include a wiki copy command, a spam-cleaning bot, and a tool to recursively upload text files inside a directory structure as wiki {pages.All} {WikiGateway} tools are compatible with a number of different wiki engines. Developers can use {WikiGateway} to hide the differences between wiki engines and build applications which interoperate with many different wiki engines.},
66 booktitle = {Proceedings of the 2005 international symposium on Wikis},
67 publisher = {{ACM}},
68 author = {Bayle Shanks},
69 year = {2005},
70 keywords = {atom,client-side wiki,interoperability,interwiki,middleware,webdav,wiki,wikiclient,wikigateway,wikirpcinterface,wiki xmlrpc},
71 pages = {53--66}
72 },
74 @article{zhang_v3_2008,
75 title = {V3 Spinal Neurons Establish a Robust and Balanced Locomotor Rhythm during Walking},
76 volume = {60},
77 issn = {0896-6273},
78 url = {http://www.sciencedirect.com/science/article/B6WSS-4TMK33J-C/2/9281fbcc359d1ad037a368824abbd871},
79 doi = {10.1016/j.neuron.2008.09.027},
80 abstract = {Summary
81 A robust and well-organized rhythm is a key feature of many neuronal networks, including those that regulate essential behaviors such as circadian rhythmogenesis, breathing, and locomotion. Here we show that excitatory V3-derived neurons are necessary for a robust and organized locomotor rhythm during walking. When V3-mediated neurotransmission is selectively blocked by the expression of the tetanus toxin light chain subunit {(TeNT),} the regularity and robustness of the locomotor rhythm is severely perturbed. A similar degeneration in the locomotor rhythm occurs when the excitability of V3-derived neurons is reduced acutely by ligand-induced activation of the allatostatin receptor. The V3-derived neurons additionally function to balance the locomotor output between both halves of the spinal cord, thereby ensuring a symmetrical pattern of locomotor activity during walking. We propose that the V3 neurons establish a regular and balanced motor rhythm by distributing excitatory drive between both halves of the spinal cord.},
82 number = {1},
83 journal = {Neuron},
84 author = {Ying Zhang and Sujatha Narayan and Eric Geiman and Guillermo M. Lanuza and Tomoko Velasquez and Bayle Shanks and Turgay Akay and Jason Dyck and Keir Pearson and Simon Gosgnach and {Chen-Ming} Fan and Martyn Goulding},
85 month = oct,
86 year = {2008},
87 keywords = {{MOLNEURO}},
88 pages = {84--96}
89 },
91 @article{van_essen_integrated_2001,
92 title = {An integrated software suite for surface-based analyses of cerebral cortex},
93 volume = {8},
94 issn = {1067-5027},
95 url = {http://www.ncbi.nlm.nih.gov/pubmed/11522765},
96 abstract = {The authors describe and illustrate an integrated trio of software programs for carrying out surface-based analyses of cerebral cortex. The first component of this trio, {SureFit} {(Surface} Reconstruction by Filtering and Intensity Transformations), is used primarily for cortical segmentation, volume visualization, surface generation, and the mapping of functional neuroimaging data onto surfaces. The second component, Caret {(Computerized} Anatomical Reconstruction and Editing Tool Kit), provides a wide range of surface visualization and analysis options as well as capabilities for surface flattening, surface-based deformation, and other surface manipulations. The third component, {SuMS} {(Surface} Management System), is a database and associated user interface for surface-related data. It provides for efficient insertion, searching, and extraction of surface and volume data from the database.},
97 number = {5},
98 journal = {Journal of the American Medical Informatics Association: {JAMIA}},
99 author = {D C Van Essen and H A Drury and J Dickson and J Harwell and D Hanlon and C H Anderson},
100 year = {2001},
101 note = {{PMID:} 11522765},
102 keywords = {Anatomy, {Artistic,Anatomy,} {Cross-Sectional,Brain,Cerebral} {Cortex,Databases,} {Factual,Humans,Image} Processing, {Computer-Assisted,Magnetic} Resonance {Imaging,Medical} {Illustration,Neuroanatomy,Software,Systems} Integration},
103 pages = {443--59}